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HEREDITARYDemos

Gut-Brain Viewer

Gut-Brain Viewer
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Contact: Casper van Leeuwen

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The Gut-Brain Viewer visualizes gut microbiota-brain links from LICA outputs via three linked views. An interactive microbiota matrix shows organism Z-scores per component with thresholding and selection. A modality stacked-bar view displays percent contributions and loads the selected modality. Interactive brain slices and volumetric renders show voxel Z-scores for SN, ECN, or DMN from 4D NIfTI files.

Hereditary Brain-gut visualization

Large data files

Before you run or build this application please add the brain LICA images found here: https://surfdrive.surf.nl/s/FTqedjssmQmGFdp, in the src/assets/example-data/neuro directory.

Starting the application

To run the visualization on your own system clone this repository and execute the following commands (needs npm on your system):

  1. npm install
  2. npm run dev

License

This project is licensed under the MIT License – see the LICENSE file for details.